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Statistical thermodynamics and stochastic kinetics : an introduction for engineers / Yiannis N. Kaznessis.
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Title:Statistical thermodynamics and stochastic kinetics : an introduction for engineers / Yiannis N. Kaznessis.
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Author/Creator:Kaznessis, Yiannis Nikolaos, 1971-
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Published/Created:Cambridge ; New York : Cambridge University Press, 2012.
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Holdings
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Location:WOODWARD LIBRARY stacksWhere is this?
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Call Number: TP155.2.T45 K39 2012
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Number of Items:1
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Status:Available
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Links:Donor bookplate
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Location:WOODWARD LIBRARY stacksWhere is this?
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Library of Congress Subjects:Statistical thermodynamics.
Stochastic processes.
Molucular dynamics--Simulation methods.
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Description:xii, 314 p. : ill. ; 24 cm.
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Summary:"Presenting the key principles of thermodynamics from a microscopic point of view, this book provides engineers with the knowledge they need to apply thermodynamics and solve engineering challenges at the molecular level. It clearly explains the concerns of entropy and free energy, emphasising key concepts used in equilibrium applications, whilst stochastic processes, such as stochastic reaction kinetics, are also covered. It provides a classical microscopic interpretation of thermodynamic concepts which is key for engineers, rather than focusing on more esoteric concepts of statistical thermodynamics and quantum mechanics. Coverage of molecular dynamics and Monte Carlo simulations as natural extensions of the theoretical treatment of statistical thermodynamics is also included, teaching readers how to use computer simulations and thus enabling them to understand and engineer the microcosm. Featuring many worked examples and over 100 end-of-chapter exercises, it is ideal for use in the classroom as well as for self-study"--Provided by publisher.
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Notes:Includes bibliographical references and index.
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ISBN:9780521765619
0521765617
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Contents:Machine generated contents note: 1. Introduction
1.1. Prologue
1.2. If we had only a single lecture in statistical thermodynamics
2. Elements of probability and combinatorial theory
2.1. Probability theory
2.1.1. Useful definitions
2.1.2. Probability distributions
2.1.3. Mathematical expectation
2.1.4. Moments of probability distributions
2.1.5. Gaussian probability distribution
2.2. Elements of combinatorial analysis
2.2.1. Arrangements
2.2.2. Permutations
2.2.3. Combinations
2.3. Distinguishable and indistinguishable particles
2.4. Stirling's approximation
2.5. Binomial distribution
2.6. Multinomial distribution
2.7. Exponential and Poisson distributions
2.8. One-dimensional random walk
2.9. Law of large numbers
2.10. Central limit theorem
2.11. Further reading
2.12. Exercises
3. Phase spaces, from classical to quantum mechanics, and back
3.1. Classical mechanics
3.1.1. Newtonian mechanics
3.1.2. Generalized coordinates
3.1.3. Lagrangian mechanics
3.1.4. Hamiltonian mechanics
3.2. Phase space
3.2.1. Conservative systems
3.3. Quantum mechanics
3.3.1. Particle-wave duality
3.3.2. Heisenberg's uncertainty principle
3.4. From quantum mechanical to classical mechanical phase spaces
3.4.1. Born-Oppenheimer approximation
3.5. Further reading
3.6. Exercises
4. Ensemble theory
4.1. Distribution function and probability density in phase space
4.2. Ensemble average of thermodynamic properties
4.3. Ergodic hypothesis
4.4. Partition function
4.5. Microcanonical ensemble
4.6. Thermodynamics from ensembles
4.7. S = kB In Ω, or entropy understood
4.8. Ω for ideal gases
4.9. Ω with quantum uncertainty
4.10. Liouville's equation
4.11. Further reading
4.12. Exercises
5. Canonical ensemble
5.1. Probability density in phase space
5.2. NVT ensemble thermodynamics
5.3. Entropy of an NVT system
5.4. Thermodynamics of NVT ideal gases
5.5. Calculation of absolute partition functions is impossible and unnecessary
5.6. Maxwell-Boltzmann velocity distribution
5.7. Further reading
5.8. Exercises
6. Fluctuations and other ensembles
6.1. Fluctuations and equivalence of different ensembles
6.2. Statistical derivation of the NVT partition function
6.3. Grand-canonical and isothermal-isobaric ensembles
6.4. Maxima and minima at equilibrium
6.5. Reversibility and the second law of thermodynamics
6.6. Further reading
6.7. Exercises
7. Molecules
7.1. Molecular degrees of freedom
7.2. Diatomic molecules
7.2.1. Rigid rotation
7.2.2. Vibrations included
7.2.3. Subatomic degrees of freedom
7.3. Equipartition theorem
7.4. Further reading
7.5. Exercises
8. Non-ideal gases
8.1. virial theorem
8.1.1. Application of the virial theorem: equation of state for non-ideal systems
8.2. Pairwise interaction potentials
8.2.1. Lennard-Jones potential
8.2.2. Electrostatic interactions
8.2.3. Total intermolecular potential energy
8.3. Virial equation of state
8.4. van der Waals equation of state
8.5. Further reading
8.6. Exercises
9. Liquids and crystals
9.1. Liquids
9.2. Molecular distributions
9.3. Physical interpretation of pair distribution functions
9.4. Thermodynamic properties from pair distribution functions
9.5. Solids
9.5.1. Heat capacity of monoatomic crystals
9.5.2. Einstein model of the specific heat of crystals
9.5.3. Debye model of the specific heat of crystals
9.6. Further reading
9.7. Exercises
10. Beyond pure, single-component systems
10.1. Ideal mixtures
10.1.1. Properties of mixing for ideal mixtures
10.2. Phase behavior
10.2.1. law of corresponding states
10.3. Regular solution theory
10.3.1. Binary vapor-liquid equilibria
10.4. Chemical reaction equilibria
10.5. Further reading
10.6. Exercises
11. Polymers - Brownian dynamics
11.1. Polymers
11.1.1. Macromolecular dimensions
11.1.2. Rubber elasticity
11.1.3. Dynamic models of macromolecules
11.2. Brownian dynamics
11.3. Further reading
11.4. Exercises
12. Non-equilibrium thermodynamics
12.1. Linear response theory
12.2. Time correlation functions
12.3. Fluctuation-dissipation theorem
12.4. Dielectric relaxation of polymer chains
12.5. Further reading
12.6. Exercises
13. Stochastic processes
13.1. Continuous-deterministic reaction kinetics
13.2. Away from the thermodynamic limit - chemical master equation
13.2.1. Analytic solution of the chemical master equation
13.3. Derivation of the master equation for any stochastic process
13.3.1. Chapman-Kolmogorov equation
13.3.2. Master equation
13.3.3. Fokker-Planck equation
13.3.4. Langevin equation
13.3.5. Chemical Langevin equations
13.4. Further reading
13.5. Exercises
14. Molecular simulations
14.1. Tractable exploration of phase space
14.2. Computer simulations are tractable mathematics
14.3. Introduction to molecular simulation techniques
14.3.1. Construction of the molecular model
14.3.2. Semi-empirical force field potential
14.3.3. System size and geometry
14.3.4. Periodic boundary conditions
14.3.5. Fortran code for periodic boundary conditions
14.3.6. Minimum image convection
14.4. How to start a simulation
14.5. Non-dimensional simulation parameters
14.6. Neighbor lists: a time-saving trick
14.7. Further reading
14.8. Exercises
15. Monte Carlo simulations
15.1. Sampling of probability distribution functions
15.2. Uniformly random sampling of phase space
15.3. Markov chains in Monte Carlo
15.4. Importance sampling
15.4.1. How to generate states
15.4.2. How to accept states
15.4.3. Metropolis Monte Carlo pseudo-code
15.4.4. Importance sampling with a coin and a die
15.4.5. Biased Monte Carlo
15.5. Grand canonical Monte Carlo
15.6. Gibbs ensemble Monte Carlo for phase equilibria
15.7. Further reading
15.8. Exercises
16. Molecular dynamics simulations
16.1. Molecular dynamics simulation of simple fluids
16.2. Numerical integration algorithms
16.2.1. Predictor-corrector algorithms
16.2.2. Verlet algorithms
16.3. Selecting the size of the time step
16.4. How long to run the simulation?
16.5. Molecular dynamics in other ensembles
16.5.1. Canonical ensemble molecular dynamics simulations
16.6. Constrained and multiple time step dynamics
16.7. Further reading
16.8. Exercises
17. Properties of matter from simulation results
17.1. Structural properties
17.2. Dynamical information
17.2.1. Diffusion coefficient
17.2.2. Correlation functions
17.2.3. Time correlation functions
17.3. Free energy calculations
17.3.1. Free energy perturbation methods
17.3.2. Histogram methods
17.3.3. Thermodynamic integration methods
17.4. Further reading
17.5. Exercises
18. Stochastic simulations of chemical reaction kinetics
18.1. Stochastic simulation algorithm
18.2. Multiscale algorithms for chemical kinetics
18.2.1. Slow-discrete region (I)
18.2.2. Slow-continuous region (II)
18.2.3. Fast-discrete region (III)
18.2.4. Fast-continuous stochastic region (IV)
18.2.5. Fast-continuous deterministic region (V)
18.3. Hybrid algorithms
18.4. Hybrid stochastic algorithm
18.4.1. System partitioning
18.4.2. Propagation of the fast subsystem - chemical Langevin equations
18.4.3. Propagation of the slow subsystem - jump equations
18.5. Hy3S - Hybrid stochastic simulations for supercomputers
18.6. Multikin - Multiscale kinetics
18.7. Further reading
18.8. Exercises
Appendices
A. Physical constants and conversion factors
A.1. Physical constants
A.2. Conversion factors
B. Elements of classical thermodynamics
B.1. Systems, properties, and states in thermodynamics
B.2. Fundamental thermodynamic relations.