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    New clinical genetics 3 / Andrew Read and Dian Donnai.

    • Title:New clinical genetics 3 / Andrew Read and Dian Donnai.
    •    
    • Variant Title:New clinical genetics three
      Genetics
    • Author/Creator:Read, Andrew P., 1939- author.
    • Other Contributors/Collections:Donnai, D. (Dian), 1945- author.
    • Published/Created:Banbury, UK : Scion, 2015.
    • Holdings

       
    • Library of Congress Subjects:Medical genetics.
      Medical genetics--Case studies.
      Human chromosome abnormalities--Diagnosis--Case studies.
      Genetic Diseases, Inborn--Case studies.
    • Medical Subjects: Genetics, Medical--methods.
    • Edition:Third edition.
    • Description:xxiii, 448 pages : illustrations (chiefly colour) ; 27 cm
    • Summary:"In the few years since the previous edition technical progress, especially the widespread use of whole-genome technologies, has brought many advances in the understanding, diagnosis and treatment of genetic disease. As a result, most chapters have been substantially rewritten and updated to reflect this. The unique structure and format remains the same, but significant new material has been added to cover: the widespread use of next-generation sequencing as a routine diagnostic tool; the checking of a patient's whole exome for the cause of their problem; noninvasive prenatal diagnosis by next-generation sequencing of free fetal DNA in the maternal circulation; a new integrated treatment of epigenetics; mosaicism, 'RASopathies' and disorders of the spliceosome are described in new Disease boxes; and dysmorphology in more detail. New Clinical Genetics continues to offer the most innovative case-based approach to modern genetics. It is used worldwide as a textbook for medical students, but also as an essential guide to the field for genetic counselors, physician assistants, and clinical and nurse geneticists."--Publisher's website.
    • Notes:Previous edition: 2011.
      Includes bibliographical references and index.
    • ISBN:9781907904677 paperback
      1907904670 paperback
    • Contents:Machine generated contents note: 1.1. Case studies
      Case 1: Ashton family
      Case 2: Brown family
      Box 1.1: The pleiotropic effects of cystic fibrosis
      Case 3: Choudhary family
      Case 4: Davies family
      Case 5: Elliot family
      Case 6: Fletcher family
      1.2. Science toolkit
      Box 1.2: How to take a family history and draw a pedigree
      1.3. Investigations of patients
      Case 1: Ashton family
      Case 2: Brown family
      Case 3: Choudhary family
      Box 1.3: Relationships
      Case 4: Davies family
      Case 5: Elliot family
      Case 6: Fletcher family
      1.4. Going deeper
      art of pedigree interpretation
      Box 1.4: Summary of modes of inheritance of monogenic characters
      Penetrance and expressivity: pitfalls in inheritance and counseling
      Rarer modes of inheritance
      Disease box 1: Type 1 Neurofibromatosis
      Some further problems in pedigree interpretation
      Mosaicism
      1.5. References
      Useful websites
      1.6. Self-assessment questions
      2.1. Case studies
      Case 7: Green family
      Case 8: Howard family
      Case 9: Ingram family
      2.2. Science toolkit
      Why clinicians need to know about chromosomes
      How are chromosomes studied?
      Box 2.1: Material for chromosome analysis
      Box 2.2: Chromosomes and their abnormalities: nomenclature and glossary
      Chromosome abnormalities
      Box 2.3: Syndromes due to numerical chromosome abnormalities
      Box 2.4: Recurrent microdeletion and microduplication syndromes
      Why do we have chromosomes?
      Centromeres and telomeres
      behavior of chromosomes during cell division
      2.3. Investigations of patients
      Case 7: Green family
      Case 8: Howard family
      Case 9: Ingram family
      Case 5: Elliot family
      2.4. Going deeper
      What are chromosomes?
      Numerical and structural chromosome abnormalities
      Copy number variants
      Balanced and unbalanced abnormalities
      Constitutional and mosaic abnormalities
      Disease box 2: A microdeletion syndrome: Williams-Beuren syndrome
      2.5. References
      Useful websites
      2.6. Self-assessment questions
      3.1. Case studies
      Case 10: Johnson family
      3.2. Science toolkit
      Structure of nucleic acids
      Box 3.1: A note on units
      structure of genes: exons and introns
      Box 3.2: 5' and 3' ends
      Splicing of the primary transcript
      Translation and the genetic code
      Box 3.3: The reading frame
      Translation is not the end of the story
      Box 3.4: Biosynthesis of collagens
      3.3. Investigations of patients
      Case 10: Johnson family
      Case 1: Ashton family
      Case 2: Brown family
      Case 3: Choudhary family
      Case 4: Davies family
      Case 5: Elliot family
      Case 6: Fletcher family
      Case 7: Green family
      Case 8: Howard family
      Case 9: Ingram family
      3.4. Going deeper
      Some chemistry
      Box 3.5: Chemical formulae of A, G, C, T and U
      Box 3.6: Structure of proteins
      One gene often encodes more than one protein
      Switching genes on and off: transcription and its controls
      From gene to genome
      Box 3.7: How to use the ENSEMBL genome browser
      Looking at our noncoding DNA
      Disease box 3: From genes to diseases: the RASopathies
      3.5. References
      General background
      Useful websites
      3.6. Self-assessment questions
      4.1. Case studies
      Case 11: Kowalski family
      Case 12: Lipton family
      Case 13: Meinhardt family
      4.2. Science toolkit
      Nucleic acid hybridization
      Using hybridization as the basis for DNA testing
      Box 4.1: Principle of Southern blotting
      Box 4.2: Restriction endonucleases
      Box 4.3: Gel electrophoresis
      Amplifying a sequence of interest: the polymerase chain reaction
      Box 4.4: Understanding PCR
      4.3. Investigations of patients
      Cases studied using a hybridization procedure
      Case 7: Green family
      Case 5: Elliott family
      Case 13: Meinhardt family
      Case 11: Kowalski family
      Cases studied using PCR
      Case 9: Ingram family
      Case 4: Davies family
      Case 1: Ashton family
      Case 12: Lipton family
      4.4. Going deeper
      Quantitative PCR
      Chromosome abnormalities
      Chromosome painting
      Testing RNA
      Testing protein
      Disease box 4: Diseases caused by expanding nucleotide repeats
      4.5. References
      Useful websites
      4.6. Self-assessment questions
      5.1. Case studies
      Case 14: Nicolaides family
      5.2. Science toolkit
      Methods for detecting specific sequence changes
      Box 5.1: A brief guide to nomenclature of mutations
      Methods for scanning a gene for any sequence change
      DNA sequencing: the ultimate test
      5.3. Investigation of patients
      stories so far
      Case 14: Nicolaides family
      Case 2: Brown family
      Case 6: Fletcher family
      Case 4: Davies family
      Case 8: Howard family
      Case 11: Kowalski family
      5.4. Going deeper
      three questions
      Filtering the data
      Where's it all going?
      Disease box 5: Long QT syndrome
      5.5. References
      5.6. Self-assessment questions
      6.1. Case studies
      Case 15: O'Reilly family
      6.2. Science toolkit
      Box 6.1: Summary of types of mutation considered in this section
      Deletion or duplication of a whole gene
      Disruption of a gene
      Mutations that affect the transcription of an intact coding sequence
      Mutations that affect splicing of the primary transcript
      Mutations that cause errors in translation
      Mutations that cause amino acid substitutions
      6.3. Investigations of patients
      Case 1: Ashton family
      Case 2: Brown family
      Case 4: Davies family
      Case 6: Fletcher family
      Case 11: Kowalski family
      Case 14: Nicolaides family
      Case 15: O'Reilly family
      6.4. Going deeper
      Loss of function and gain of function changes
      Dominant or recessive?
      Understanding the phenotype
      Genotype-phenotype correlations
      Box 6.2: Genotype-phenotype correlation in mutations of the FGFR genes
      Dosage sensitivity and the pathology of chromosomal abnormalities
      How do mutations arise?
      Disease box 6: Molecular pathology of variants in the androgen receptor gene
      6.5. References
      Useful websites
      6.6. Self-assessment questions
      Box 6.3: Partial sequence of PAX3 gene for Self-assessment questions
      7.1. Case studies
      Case 16: Portillo family
      Box 7.1: Types and functions of lymphocytes
      Case 17: Qian family
      Case 18: Rogers family
      7.2. Science toolkit
      DNA methylation
      Studying DNA methylation
      Relevance to patients
      X-inactivation
      Imprinting: why you need a mother and a father
      7.3. Investigations of patients
      Case 4: Davies family
      Case 9: Ingram family
      Case 16: Portillo family
      Cases 17: Qian family and 18: Rogers family
      7.4. Going deeper
      Other imprinting-related disorders
      What is the purpose of imprinting?
      DNA methylation and CpG islands
      Chromatin flavors and epigenomics
      How far do epigenetic effects determine individual differences?
      Disease box 7: Chromatin diseases
      7.5. References
      Useful website
      7.6. Self-assessment questions
      8.1. Case studies
      Case 19: Stott family
      Case 20: Tierney family
      8.2. Science toolkit
      Inborn errors of metabolism
      Box 8.1: Some history
      Box 8.2: Deletions and gene conversions in 21-hydroxylase deficiency
      Pharmacogenetics
      Immunogenetics
      8.3. Investigations of patients
      Case 19: Stott family
      Case 20: Tierney family
      Case 16: Portillo family
      8.4. Going deeper
      Inborn errors of metabolism
      Box 8.3: Inability to make vitamin C: a universal inborn error in humans
      Box 8.4: Lactose intolerance: a common metabolic polymorphism
      Pharmacogenetics
      Immunogenetics
      Disease box 8: Disorders of the spliceosome
      8.5. References
      Useful websites
      8.6. Self-assessment questions
      9.1. Case studies
      Dyschromatosis symmetrica hereditaria
      9.2. Science toolkit
      Associating a phenotype with a DNA sequence variant
      Box 9.1: Genetic markers
      Demonstrating why a variant causes a phenotype
      9.3. Investigations of patients
      Dyschromatosis symmetrica hereditaria
      Box 9.2: Centimorgans and megabases
      Case 3: Choudhary family
      Case 11: Kowalski family
      9.4. Going deeper
      Strategies for gene discovery by exome sequencing
      Problems with the sequencing approach
      Functional studies: the gold standard for gene identification
      Disease box 9: Mosaicism in clinical genetics
      9.5. References
      General background
      Useful websites
      9.6. Self-assessment questions
      10.1. Case studies
      Case 21: Ulmer family
      10.2. Science toolkit
      Box 10.1: The Hardy-Weinberg distribution
      Using Hardy-Weinberg to calculate carrier risks
      Changing gene frequencies
      Factors determining gene frequencies
      Heterozygote advantage
      Heterozygote advantage or founder effect?
      10.3. Investigations of patients
      Case 21: Ulmer family
      Box 10.2: The risk a healthy sib is a carrier
      Case 3: Choudhary family
      Box 10.3: Calculating the effects of inbreeding
      10.4. Going deeper
      What is the chance the offspring of a consanguineous marriage
      will have a recessive disease?
      Can we abolish genetic disease?
      Box 10.4: Should treated people repay their debt to society by not having children?
      Disease box 10: Jewish diseases and Finnish diseases
      10.5. References
      10.6. Self-assessment questions
      11.1. Case studies
      Case 22: Vlasi family
      11.2. Science toolkit
      Screening versus diagnostic tests
      Box 11.1: Parameters of a screening test
      When might screening be done?
      Contents note continued: Who should be screened?
      How should screening be done?
      Antenatal screening for Down syndrome and other trisomies
      Box 11.2: What is the best prenatal diagnostic test for Down syndrome?
      11.3. Investigations of patients
      Case 8: Howard family
      Case 22: Vlasi family
      Case 4: Davies family
      Case 2: Brown family
      Case 21: Ulmer family
      11.4. Going deeper
      What conditions should we screen for?
      Box 11.3: The Population Attributable Risk
      Box 11.4: Criteria used by the UK National Screening Committee
      Incidental findings: a form of opportunistic screening
      Box 11.5: 'Lifestyle' genetic testing
      Disease box 11: Familial hypercholesterolemia
      11.5. References
      Useful websites
      11.6. Self-assessment questions
      12.1. Case studies
      Case 23: Wilson family
      Case 24: Xenakis family
      12.2. Science toolkit
      Natural selection and the evolution of cancer
      Overcoming the defenses
      Box 12.1: Genomic instability in cancer cells
      Box 12.2: Living for ever: the importance of telomeres
      Oncogenes
      Box 12.3: The Philadelphia chromosome and the chimeric BCR-ABL gene
      Tumor suppressor genes
      normal functions of tumor suppressor genes
      Box 12.4: The Gl-S checkpoint
      MicroRNAs in cancer
      Epigenetic changes in cancer
      multistage development of cancer
      12.3. Investigations of patients
      Case 20: Tierney family
      Case 23: Wilson family
      Case 24: Xenakis family
      12.4. Going deeper
      Getting the complete picture: whole genome studies
      Genomics-based classification of tumors
      top-down approach the hallmarks of cancer
      Disease box 12: von Hippel-Lindau disease
      12.5. References
      Useful websites
      12.6. Self-assessment questions
      13.1. Case studies
      Case 25: Yamomoto family
      Case 26: Zuabi family
      13.2. Science toolkit
      Two models of genetic determination
      Dichotomous versus quantitative characters
      Polygenic theory
      Box 13.1: Polygenic susceptibility to a disease
      Investigating the genetics of complex diseases
      Linkage studies to identify susceptibility factors
      Association studies to identify susceptibility
      Box 13.2: Linkage and association
      13.3. Investigations of patients
      Case 25: Yamomoto family
      Case 26: Zuabi family
      13.4. Going deeper
      Haplotype blocks and tag SNPs
      Making GWAS work
      Why have GWAS told us so little that is clinically useful?
      So should we be testing for susceptibility to common diseases?
      Disease box 13: Autism
      13.5. References
      Useful websites
      13.6. Self-assessment questions
      14.1. Case studies
      14.2. Science toolkit
      Box 14.1: Common reasons for referral to a genetic clinic
      importance of a diagnosis
      Risk assessment and genetic counseling
      Box 14.2: An introduction to Bayesian calculations in genetics
      Reproductive genetics
      Dysmorphology
      Box 14.2: Terminology used in dysmorphology
      Genetic testing
      Box 14.4: Predictive testing for Huntington disease
      Management and treatment of genetic disorders
      14.3. Investigations of patients
      Possibilities for prenatal diagnosis
      Current possibilities for treatment
      Possibilities for gene therapy
      Possibilities for cell therapy
      14.4. Going deeper
      Gene therapy
      Stem cell therapy
      Diagnosis and counseling
      Information resources and care pathways for patients with rare disorders
      Testing
      Treatment
      14.5. References
      Recommended textbooks
      14.6. Self-assessment questions
      Chapter 1
      Chapter 2
      Chapter 3
      Chapter 4
      Chapter 5
      Chapter 6
      Chapter 7
      Chapter 8
      Chapter 9
      Chapter 10
      Chapter 11
      Chapter 12
      Chapter 13
      Chapter 14.
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