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    Biostatistics for epidemiology and public health using R / Bertram K.C. Chan.

    • Title:Biostatistics for epidemiology and public health using R / Bertram K.C. Chan.
    •    
    • Author/Creator:Chan, B. K. C. (Bertram Kim-Cheong), author.
    • Published/Created:New York, NY : Springer Publishing Company, LLC, [2016]
    • Holdings

       
    • Library of Congress Subjects:Epidemiology--Statistical methods.
      Biometry.
    • Medical Subjects: Biostatistics--methods.
      Epidemiology.
      Programming Languages.
      Public Health.
    • Description:xii, 446 pages ; 26 cm
    • Notes:Includes bibliographical references and index.
    • ISBN:9780826110251 paperback
      0826110258 paperback
      9780826110268 e-book
    • Contents:Machine generated contents note: 1. INTRODUCTION
      1.1. Medicine, Preventive Medicine, Public Health, and Epidemiology
      Medicine
      Preventive Medicine and Public Health
      Public Health and Epidemiology
      Review Questions for Section 1.1
      1.2. Personal Health and Public Health
      Personal Health Versus Public Health
      Review Questions for Section 1.2
      1.3. Research and Measurements in EPDM and PH
      EPDM: The Basic Science of PH
      Main Epidemiologic Functions
      Cause of Diseases
      Exposure Measurement in Epidemiology
      Additional Issues
      Review Questions for Section 1.3
      1.4. BIOS and EPDM
      Review Questions for Section 1.4
      References
      2. RESEARCH AND DESIGN IN EPIDEMIOLOGY AND PUBLIC HEALTH
      Introduction
      2.1. Causation and Association in Epidemiology and Public Health
      Bradford-Hill Criteria for Causation and Association in Epidemiology
      Legal Interpretation Using Epidemiology
      Disease Occurrence
      Review Questions for Section 2.1
      2.2. Causation and Inference in Epidemiology and Public Health
      Rothman's Diagrams for Sufficient Causation of Diseases
      Causal Inferences
      Using the Causal Criteria
      Judging Scientific Evidence
      Review Questions for Section 2.2
      2.3. Biostatistical Basis of Inference
      Modes of Inference
      Levels of Measurement
      Frequentist BIOS in EPDM
      Confidence Intervals in Epidemiology and Public Health
      Bayesian Credible Interval
      Review Questions for Section 2.3
      2.4. BIOS in EPDM and PH
      Applications of BIOS
      BIOS in EPDM and PH
      Processing and Analyzing Basic Epidemiologic Data
      Analyzing Epidemiologic Data
      Using R
      Evaluating a Single Measure of Occurrence
      Poisson Count (Incidence) and Rate Data
      Binomial Risk and Prevalence Data
      Evaluating Two Measures of Occurrence
      -Comparison of Risk: Risk Ratio and Attributable Risk
      Comparing Two Rate Estimates: Rate Ratio rr
      Comparing Two Risk Estimates: Risk Ratio RR and Disease (Morbidity) Odds Ratio DOR
      Comparing Two Odds Estimates From Case
      Control: The Salk Polio Vaccine Epidemiologic Study
      Review Questions for Section 2.4
      Exercises for Chapter 2
      Using Probability Theory
      Disease Symptoms in Clinical Drug Trials
      Risks and Odds in Epidemiology
      Case
      Control Epidemiologic Study
      Mortality, Morbidity, and Fertility Rates
      Incidence Rates in Case-Cohort Survival Analysis
      Prevalence
      Mortality Rates
      Estimating Sample Sizes
      References
      Appendix
      3. DATA ANALYSIS USING R PROGRAMMING
      Introduction
      3.1. Data and Data Processing
      Data Coding
      Data Capture
      Data Editing
      Imputations
      Data Quality
      Producing Results
      Review Questions for Section 3.1
      3.2. Beginning R
      R and Biostatistics
      First Session Using R
      R Environment
      Review Questions for Section 3.2
      3.3. R as a Calculator
      Mathematical Operations Using R
      Assignment of Values in R and Computations Using Vectors and Matrices
      Computations in Vectors and Simple Graphics
      Use of Factors in R Programming
      Simple Graphics
      X as Vectors and Matrices in Biostatistics
      Some Special Functions That Create Vectors
      Arrays and Matrices
      Use of the Dimension Function dim in R
      Use of the Matrix Function matrix in R
      Some Useful Functions Operating on Matrices in R
      NA: "Not Available" for Missing Values in Datasets
      Special Functions That Create Vectors
      Review Questions for Section 3.3
      Exercises for Section 3.3
      3.4. Using R in Data Analysis in BIOS
      Entering Data at the R Command Prompt
      Function list() and the Making of data.frame() in R
      Review Questions for Section 3.4
      Exercises for Section 3.4
      3.5. Univariate, Bivariate, and Multivariate Data Analysis
      Univariate Data Analysis
      Bivariate and Multivariate Data Analysis
      Multivariate Data Analysis
      Analysis of Variance (ANOVA)
      Review Questions for Section 3.5
      Exercises for Section 3.5
      References
      Appendix: Documentation for the plot function
      Generic X
      Y Plotting
      4. GRAPHICS USING R
      Introduction
      Choice of System
      Packages
      4.1. Base (or Traditional) Graphics
      High-Level Functions
      Low-Level Plotting Functions
      Interacting with Graphics
      Using Graphics Parameters
      Parameters List for Graphics
      Device Drivers
      Review Questions for Section 4.1
      Exercises for Section 4.1
      4.2. Grid Graphics
      lattice Package: Trellis Graphics
      Grid Model for R Graphics
      Grid Graphics Objects
      Applications to Biostatistical and Epidemiologic Investigations
      Review Questions for Section 4.2
      Exercises for Section 4.2
      References
      5. PROBABILITY AND STATISTICS IN BIOSTATISTICS
      Introduction
      5.1Theories of Probability
      What Is Probability?
      Basic Properties of Probability
      Probability Computations Using R
      Applications of Probability Theory to Health Sciences
      Typical Summary Statistics in Biostatistics: Confidence Intervals, Significance Tests, and Goodness of Fit
      Review Questions for Section 5.1
      Exercises for Section 5.1
      5.2. Typical Statistical Inference in Biostatistics: Bayesian Biostatistics
      What Is Bayesian Biostatistics?
      Bayes's Theorem in Probability Theory
      Bayesian Methodology and Survival Analysis (Time-to-Event) Models for Biostatistics in Epidemiology and Preventive Medicine
      Inverse Bayes Formula
      Modeling in Biostatistics
      Review Questions for Section 5.2
      Exercises for Section 5.2
      References
      6. CASE
      CONTROL STUDIES AND COHORT STUDIES IN EPIDEMIOLOGY
      Introduction
      6.1. Theory and Analysis of Case
      Control Studies
      Advantages and Limitations of Case
      Control Studies
      Analysis of Case
      Control Studies
      Review Questions for Section 6.1
      Exercises for Section 6.1
      6.2. Theory and Analysis of Cohort Studies
      Important Application of Cohort Studies
      Clinical Trials
      Randomized Controlled Trials
      Cohort Studies for Diseases of Choice and Noncommunicable Diseases
      Cohort Studies and the Lexis Diagram in the Biostatistics of Demography
      Review Questions for Section 6.2
      Exercises for Section 6.2
      References
      7. RANDOMIZED TRIALS, PHASE DEVELOPMENT, CONFOUNDING IN SURVIVAL ANALYSIS, AND LOGISTIC REGRESSIONS
      7.1. Randomized Trials
      Classifications of RTs by Study Design
      Randomization
      Biostatistical Analysis of Data from RTs
      Biostatistics for RTs in the R Environment
      Review Questions for Section 7.1
      Exercises for Section 7.1
      7.2. Phase Development
      Phase 0 or Preclinical Phase
      Phase I
      Phase II
      Phase III
      Pharmacoepidemiology: A Branch of Epidemiology
      Some Basic Tests in Epidemiologic Phase Development
      Review Questions for Section 7.2
      Exercises for Section 7.2
      7.3. Confounding in Survival Analysis
      Biostatistical Approaches for Controlling Confounding
      Using Regression Modeling for Controlling Confounding
      Confounding and Collinearity
      Review Questions for Section 7.3
      Exercises for Section 7.3
      7.4. Logistic Regressions
      Inappropriateness of the Simple Linear Regression When y Is a Categorical Dependent Variable
      Logistic Regression Model
      Logit
      Logistic Regression Analysis
      Generalized Linear Models in R
      Review Questions for Section 7.4
      Exercises for Section 7.4.
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